Tag: kubernetes

Building Snakemake Command Line Wrappers for Kubernetes Workflows

Posted in Snakemake


NOTE: These ideas are implemented in the repository charlesreid1/2019-snakemake-byok8s.

Table of Contents:

Recap: Workflows as Executables

In our previous blog post, Building Snakemake Command Line Wrappers, we covered some approaches to making Snakemake workflows into executables that can be run as command line utilities.

In this post, we extend those ideas to Snakemake workflows …

Tags:    python    bioinformatics    workflows    pipelines    snakemake    travis    kubernetes    minikube