NOTE: These ideas are implemented in the repository charlesreid1/2019-snakemake-byok8s.
Table of Contents:
- Recap: Workflows as Executables
- Overview of 2019-snakemake-byok8s
- Modifying the CLI
- Local Kubernetes Clusters with Minikube
- End Product: byok8s
- Next Steps
Recap: Workflows as Executables
In our previous blog post, Building Snakemake Command Line Wrappers, we covered some approaches to making Snakemake workflows into executables that can be run as command line utilities.
In this post, we extend those ideas to Snakemake workflows …