NOTE: These ideas are implemented in the repository charlesreid1/2019-snakemake-byok8s.
In our previous blog post, Building Snakemake Command Line Wrappers we covered some approaches to making Snakemake workflows into …
NOTE: These ideas are implemented in the repository charlesreid1/2019-snakemake-cli.
This blog post covers the implementation of an idea that was originally explored in a blog post from Titus Brown, Pydoit, snakemake, and workflows-as-applications.
That blog post implemented a basic command line wrapper around the Snakemake API to demonstrate how a Snakemake workflow could be …